https://nemenmanlab.org/~ilya/index.php?action=history&feed=atom&title=Physics_434%2C_2014%3A_Scripts 2026-05-17T08:49:20Z Revision history for this page on the wiki MediaWiki 1.31.0 https://nemenmanlab.org/~ilya/index.php?title=Physics_434,_2014:_Scripts&diff=569&oldid=prev 2018-07-04T16:28:43Z

<p>1 revision imported</p> <table class="diff diff-contentalign-left" data-mw="interface"> <tr class="diff-title" lang="en"> <td colspan="1" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="1" style="background-color: #fff; color: #222; text-align: center;">Revision as of 16:28, 4 July 2018</td> </tr><tr><td colspan="2" class="diff-notice" lang="en"><div class="mw-diff-empty">(No difference)</div> </td></tr></table>

Ilya https://nemenmanlab.org/~ilya/index.php?title=Physics_434,_2014:_Scripts&diff=568&oldid=prev 2014-11-25T15:10:45Z

<p></p> <p><b>New page</b></p><div>{{PHYS434-2014}}<br /> <br /> Scripts:<br /> *[[media:HW1.m |HW1.m]] -- first homework problem simulation<br /> *[[media:HW2_5.m|HW2_5.m]] -- second homework, problem 2 simulation<br /> *[[media:Ecoli.m|Ecoli.m]] -- ''E. coli'' motion simulation<br /> *[[media:LuriaDelbruck.m|LuriaDelbruck.m]] -- Luria-Delbruck simulated experiment. <br /> *[[media:LDexpt.mat|LDexpt.mat]] -- Luria-Delbruck experimental data; courtesy of Phil Nelson<br /> *[[media:gillespie_bd.m|gillespie_bd.m]] -- Birth-death process, Gillespie simulation<br /> *[[media:langevin_bd.m|langevin_bd.m]] -- Birth-death process, Langevin simulation<br /> *[[media:gillespie_mrna.m|gillespie_mrna.m]] -- bursty mRNA expression, Gillespie simulation<br /> *[[media:my_entropy.m|my_entropy.m]] -- entropy calculation for a discrete distribution<br /> *[[media:mutual.m|mutual.m]] -- mutual information calculation for a discrete 2-variable distribution<br /> *[[media:joint_pdf.m|joint_pdf.m]] -- calculating the joint distribution from the conditional and the marginal<br /> *[[media:CherryAdler.m|CherryAdler.m]] -- phase portrait of the toggle switch, courtesy of Phil Nelson<br /> *[[media:lac_switch_det.m|lac_switch_det.m]] -- deterministic dynamics of a simplified model of the lac bistable switch<br /> *[[media:lac_switch.m|lac_switch.m]] -- Gillespie stochastic dynamics of the same simplified model of the lac bistable switch<br /> <br /> Data files:<br /> *[[media:neural-3neurons.mat |neural-3neurons.mat]] -- activity of three coupled simulated neurons<br /> *[[media:neural-calabrese.txt | neural-calabrese.txt]] -- experimental neural activity of 6 neurons from a leech heart</div>

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