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The following pages are not linked from or transcluded into other pages in Ilya Nemenman: Theoretical Biophysics @ Emory.

Showing below up to 285 results in range #1 to #285.

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  1. Bel et al., 2010
  2. CNS Clinic 2012: Dynamic Clamping
  3. CNS Clinic 2012: Information theory for understanding the neural code
  4. CNS Clinic 2012: Ins and outs of script programming with Genesis
  5. CNS Clinic 2012: Model fitting with neural data: Stories from the trenches
  6. CNS Clinic 2012: Principal Components Analysis of neural and behavioral data
  7. CNS Clinic 2012: Spike train analysis
  8. Diagnostics using microarray data
  9. E. coli chemoreceptor: mesoscopic model
  10. Entropy Estimation
  11. Entropy estimation methods
  12. Establishing causality
  13. First q-bio Conference: Employment board
  14. First q-bio Conference: Participants
  15. First q-bio Conference: Program
  16. First q-bio Conference: Program Details
  17. First q-bio Summer School: Classrooms
  18. First q-bio Summer School: Gene Regulation
  19. First q-bio Summer School: Other Topics in Biological Modeling
  20. First q-bio Summer School: Participants
  21. First q-bio Summer School: Program
  22. First q-bio Summer School: School Hotel
  23. First q-bio Summer School: Signal Transduction Mechanisms
  24. First q-bio Summer School: Stochasticity in Biochemistry and Systems Biology
  25. Group seminar / Journal club
  26. INemenman
  27. Information Bottleneck Method
  28. Information processing in biological systems
  29. Installing Octave on your PC and Mac
  30. Learning, adaptation, and adaptive behaviors
  31. Michaelis-Menten reaction: pump current and other stochastic effects
  32. Mugler et al., 2009
  33. Nemenman-filtering
  34. Nemenman and Wiggins
  35. Nemenman et al.
  36. P53 regulation
  37. Personal Pages
  38. Physics 212, 2016: Syllabus
  39. Physics 212, 2017: Lab 10
  40. Physics 212, 2017: Lab 12
  41. Physics 212, 2017: Lab 4
  42. Physics 212, 2017: Lab 5: Starting with Project 2
  43. Physics 212, 2017: Lab 7
  44. Physics 212, 2017: Lecture 10
  45. Physics 212, 2017: Lecture 11: Good coding practices
  46. Physics 212, 2017: Lecture 12: More Python: Scopes and all that
  47. Physics 212, 2017: Lecture 13
  48. Physics 212, 2017: Lecture 14
  49. Physics 212, 2017: Lecture 15
  50. Physics 212, 2017: Lecture 18: Introduction to randomness. How are pseudo-random numbers generated?
  51. Physics 212, 2017: Lecture 1 - Introduction
  52. Physics 212, 2017: Lecture 2
  53. Physics 212, 2017: Lecture 23
  54. Physics 212, 2017: Lecture 24
  55. Physics 212, 2017: Lecture 25
  56. Physics 212, 2017: Lecture 3 - The Modeling Process
  57. Physics 212, 2017: Lecture 7
  58. Physics 212, 2017: Lecture 8
  59. Physics 212, 2017: Lecture 9: Errors
  60. Physics 212, 2017: Lectures 5, 6
  61. Physics 212, 2017: Syllabus
  62. Physics 212, 2018: Lab 11
  63. Physics 212, 2018: Lab 12
  64. Physics 212, 2018: Lecture 1
  65. Physics 212, 2018: Lecture 10
  66. Physics 212, 2018: Lecture 11
  67. Physics 212, 2018: Lecture 12
  68. Physics 212, 2018: Lecture 13
  69. Physics 212, 2018: Lecture 14
  70. Physics 212, 2018: Lecture 15
  71. Physics 212, 2018: Lecture 17
  72. Physics 212, 2018: Lecture 18
  73. Physics 212, 2018: Lecture 19
  74. Physics 212, 2018: Lecture 2
  75. Physics 212, 2018: Lecture 21
  76. Physics 212, 2018: Lecture 22
  77. Physics 212, 2018: Lecture 23
  78. Physics 212, 2018: Lecture 24
  79. Physics 212, 2018: Lecture 25
  80. Physics 212, 2018: Lecture 3
  81. Physics 212, 2018: Lectures 4
  82. Physics 212, 2018: Lectures 6
  83. Physics 212, 2018: Lectures 7
  84. Physics 212, 2018: Lectures 8
  85. Physics 212, 2018: Lectures 9
  86. Physics 212, 2018: Syllabus
  87. Physics 212, 2019: Lecture 18
  88. Physics 212, 2019: Lecture 19
  89. Physics 212, 2019: Lecture 20
  90. Physics 212, 2019: Lecture 22
  91. Physics 380, 2010: Basic Probability Theory
  92. Physics 380, 2010: Coding Theorems
  93. Physics 380, 2010: Fourier Analysis
  94. Physics 380, 2010: Information, Gambling, and Population Biology
  95. Physics 380, 2010: Information Theory
  96. Physics 380, 2010: Introduction
  97. Physics 380, 2010: Linear Response Theory
  98. Physics 380, 2010: Random Walks
  99. Physics 380, 2011: Block four: Adaptation
  100. Physics 380, 2011: Block one: Biological information processing is probabilistic
  101. Physics 380, 2011: Block three: Dynamical Information Processing
  102. Physics 380, 2011: Block two: Information theory in biological signaling
  103. Physics 380, 2011: Homework 1
  104. Physics 380, 2011: Homework 10
  105. Physics 380, 2011: Homework 2
  106. Physics 380, 2011: Homework 3
  107. Physics 380, 2011: Homework 4
  108. Physics 380, 2011: Homework 5
  109. Physics 380, 2011: Homework 6
  110. Physics 380, 2011: Homework 7
  111. Physics 380, 2011: Homework 8
  112. Physics 380, 2011: Homework 9
  113. Physics 380, 2011: Lecture 1
  114. Physics 380, 2011: Lecture 10
  115. Physics 380, 2011: Lecture 11
  116. Physics 380, 2011: Lecture 12
  117. Physics 380, 2011: Lecture 13
  118. Physics 380, 2011: Lecture 14
  119. Physics 380, 2011: Lecture 15
  120. Physics 380, 2011: Lecture 16
  121. Physics 380, 2011: Lecture 17
  122. Physics 380, 2011: Lecture 18
  123. Physics 380, 2011: Lecture 19
  124. Physics 380, 2011: Lecture 2
  125. Physics 380, 2011: Lecture 21
  126. Physics 380, 2011: Lecture 22
  127. Physics 380, 2011: Lecture 23
  128. Physics 380, 2011: Lecture 24
  129. Physics 380, 2011: Lecture 25
  130. Physics 380, 2011: Lecture 26
  131. Physics 380, 2011: Lecture 27
  132. Physics 380, 2011: Lecture 3
  133. Physics 380, 2011: Lecture 4
  134. Physics 380, 2011: Lecture 5
  135. Physics 380, 2011: Lecture 6
  136. Physics 380, 2011: Lecture 7
  137. Physics 380, 2011: Lecture 8
  138. Physics 380, 2011: Lecture 9
  139. Physics 380, 2012: Homework 11
  140. Physics 380, 2012: Homework 12
  141. Physics 434, 2012: Block one: Biological information processing is probabilistic
  142. Physics 434, 2012: Block three: Dynamical Information Processing
  143. Physics 434, 2012: Block two: Information theory in biological signaling
  144. Physics 434, 2012: Homework 1
  145. Physics 434, 2012: Homework 10
  146. Physics 434, 2012: Homework 2
  147. Physics 434, 2012: Homework 3
  148. Physics 434, 2012: Homework 4
  149. Physics 434, 2012: Homework 5
  150. Physics 434, 2012: Homework 6
  151. Physics 434, 2012: Homework 7
  152. Physics 434, 2012: Homework 8
  153. Physics 434, 2012: Homework 9
  154. Physics 434, 2012: Lecture 1
  155. Physics 434, 2012: Lecture 10
  156. Physics 434, 2012: Lecture 14
  157. Physics 434, 2012: Lecture 15
  158. Physics 434, 2012: Lecture 16
  159. Physics 434, 2012: Lecture 17
  160. Physics 434, 2012: Lecture 20
  161. Physics 434, 2012: Lecture 4
  162. Physics 434, 2012: Lecture 5
  163. Physics 434, 2012: Lecture 6
  164. Physics 434, 2012: Lecture 7
  165. Physics 434, 2012: Lectures 10-11
  166. Physics 434, 2012: Lectures 12-13
  167. Physics 434, 2012: Lectures 2-3
  168. Physics 434, 2012: Lectures 8, 9
  169. Physics 434, 2012: Syllabus
  170. Physics 434, 2014: Block one: Biological information processing is probabilistic
  171. Physics 434, 2014: Central limit theorem
  172. Physics 434, 2014: Continuous randomness
  173. Physics 434, 2014: Homework 1
  174. Physics 434, 2014: Homework 2
  175. Physics 434, 2014: Homework 3
  176. Physics 434, 2014: Homework 4
  177. Physics 434, 2014: Homework 5
  178. Physics 434, 2014: Homework 6
  179. Physics 434, 2014: Homework 7
  180. Physics 434, 2014: Homework 8
  181. Physics 434, 2014: Introduction
  182. Physics 434, 2014: Luria-Delbruck experiment
  183. Physics 434, 2014: Project 1 -- Multistability and a molecular clock
  184. Physics 434, 2014: Project 2 -- Who controls whom?
  185. Physics 434, 2014: Project 3 -- Noise propagation
  186. Physics 434, 2014: Project 4 -- Luria and Delbruck, take 2
  187. Physics 434, 2014: Projects
  188. Physics 434, 2014: Random walks and diffusion
  189. Physics 434, 2014: Scripts
  190. Physics 434, 2014: Search and first passage times
  191. Physics 434, 2014: Stochastic chemical kinetics
  192. Physics 434, 2014: Syllabus
  193. Physics 434, 2015: Homework 1
  194. Physics 434, 2015: Homework 10
  195. Physics 434, 2015: Homework 2
  196. Physics 434, 2015: Homework 3
  197. Physics 434, 2015: Homework 4
  198. Physics 434, 2015: Homework 5
  199. Physics 434, 2015: Homework 6
  200. Physics 434, 2015: Homework 7
  201. Physics 434, 2015: Homework 8
  202. Physics 434, 2015: Homework 9
  203. Physics 434, 2015: Introduction to Information theory
  204. Physics 434, 2015: Project 1, Luria-Delbruck, Revisited
  205. Physics 434, 2015: Project 2 -- Multistability in gene expression
  206. Physics 434, 2015: Project 3 -- Who controls whom?
  207. Physics 434, 2015: Project 4 -- Noise Propagation
  208. Physics 434, 2015: Project 5
  209. Physics 434, 2015: Syllabus
  210. Physics 434, 2016: Discrete randomness
  211. Physics 434, 2016: Homework 1
  212. Physics 434, 2016: Homework 2
  213. Physics 434, 2016: Homework 3
  214. Physics 434, 2016: Homework 4
  215. Physics 434, 2016: Homework 5
  216. Physics 434, 2016: Homework 6
  217. Physics 434, 2016: Homework 7
  218. Physics 434, 2016: Homework 8
  219. Physics 434, 2016: Homework 9
  220. Physics 434, 2016: Law of large numbers
  221. Physics 434, 2016: Project 1
  222. Physics 434, 2016: Project 2
  223. Physics 434, Lecture 1 additional notes
  224. Physics 511A, 2011: Chapter 1, Volume 2. The principle of relativity
  225. Physics 511A, 2012: Chapter 1, Volume 8. Electrostatics of conductors
  226. Physics 511A, 2012: Chapter 2, Volume 2. Relativistic mechanics
  227. Physics 511A, 2012: Chapter 2, Volume 8. Electrostatics of dielectric
  228. Physics 511A, 2012: Chapter 3, Volume 2. Charges in electromagnetic field
  229. Physics 511A, 2012: Chapter 3, Volume 8. Steady current
  230. Physics 511A, 2012: Chapter 4, Volume 2. Electromagnetic field equations
  231. Physics 511A, 2012: Chapter 4, Volume 8. Static magnetic field
  232. Physics 511A, 2012: Chapter 5, Volume 2. Constant electromagnetic fields
  233. Physics 511A, 2012: Chapter 6, Volume 2. Electromagnetic waves
  234. Physics 511A, 2012: Chapter 7, Volume 2. Propagation of light
  235. Physics 511A, 2012: Chapter 8, Volume 2. The field of moving charges
  236. Physics 511A, 2012: Chapter 9, Volume 2. Radiation of electromagnetic waves
  237. Physics 511A, 2012: Waves in media
  238. Physics 511A, 2013: Chapter 1, Volume 2. The principle of relativity
  239. Physics 511A, 2013: Chapter 1, Volume 8. Electrostatics of conductors
  240. Physics 511A, 2013: Chapter 2, Volume 2. Relativistic mechanics
  241. Physics 511A, 2013: Chapter 2, Volume 8. Electrostatics of dielectric
  242. Physics 511A, 2013: Chapter 3, Volume 2. Charges in electromagnetic field
  243. Physics 511A, 2013: Chapter 3, Volume 8. Steady current
  244. Physics 511A, 2013: Chapter 4, Volume 2. Electromagnetic field equations
  245. Physics 511A, 2013: Chapter 4, Volume 8. Static magnetic field
  246. Physics 511A, 2013: Chapter 5, Volume 2. Constant electromagnetic fields
  247. Physics 511A, 2013: Chapter 6, Volume 2. Electromagnetic waves
  248. Physics 511A, 2013: Chapter 7, Volume 2. Propagation of light
  249. Physics 511A, 2013: Chapter 8, Volume 2. The field of moving charges
  250. Physics 511A, 2013: Chapter 9, Volume 2. Radiation of electromagnetic waves
  251. Physics 511A, 2013: Waves in media
  252. Physics 511A, 2014: Chapter 1, Volume 2. The principle of relativity
  253. Physics 511A, 2014: Chapter 1, Volume 8. Electrostatics of conductors
  254. Physics 511A, 2014: Chapter 2, Volume 2. Relativistic mechanics
  255. Physics 511A, 2014: Chapter 2, Volume 8. Electrostatics of dielectric
  256. Physics 511A, 2014: Chapter 3, Volume 2. Charges in electromagnetic field
  257. Physics 511A, 2014: Chapter 3, Volume 8. Steady current
  258. Physics 511A, 2014: Chapter 4, Volume 2. Electromagnetic field equations
  259. Physics 511A, 2014: Chapter 4, Volume 8. Static magnetic field
  260. Physics 511A, 2014: Chapter 5, Volume 2. Constant electromagnetic fields
  261. Physics 511A, 2014: Chapter 5, Volume 8. Ferromagnetism and antiferromagnetism
  262. Physics 511A, 2014: Chapter 6, Volume 2. Electromagnetic waves
  263. Physics 511A, 2014: Chapter 7, Volume 2. Propagation of light
  264. Physics 511A, 2014: Chapter 8, Volume 2. The field of moving charges
  265. Physics 511A, 2014: Chapter 9, Volume 2. Radiation of electromagnetic waves
  266. Physics 511A, 2014: Superconductivity
  267. Physics 511A, 2014: Waves in media
  268. Presentations
  269. Publications
  270. Publications about our research
  271. RBC Metabolic Network
  272. Relational networks
  273. Research Interests
  274. Reverse-engineering algorithms benchmarks
  275. Reverse engineering cellular networks
  276. Rise of the 140 character paper
  277. Simpler methods for High Throughput Data analysis
  278. Sinitsyn et al., 2009
  279. Stochastic dynamics on biological networks
  280. Stochastic path integral
  281. Stochasticity in regulatory networks
  282. The Berry phase in stochastic kinetics
  283. Tools and approximations for stochastic analysis
  284. Visual neural computation
  285. Wang et al., 2007

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