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  1. About our work
  2. Adler et al., 2000
  3. Bandaru et al., 2011
  4. Behavioral Analysis
  5. Bel and Nemenman, 2009
  6. Bel et al., 2010
  7. Bialek et al., 2001a
  8. Bialek et al., 2001b
  9. CNS Clinic 2012: Dynamic Clamping
  10. CNS Clinic 2012: Information theory for understanding the neural code
  11. CNS Clinic 2012: Ins and outs of script programming with Genesis
  12. CNS Clinic 2012: Model fitting with neural data: Stories from the trenches
  13. CNS Clinic 2012: Principal Components Analysis of neural and behavioral data
  14. CNS Clinic 2012: Spike train analysis
  15. Calendar: Travel and Visitors
  16. Cheng et al., 2013
  17. Cheong et al., 2011
  18. Computational Neuroscience Methods Clinic, 2012
  19. Conference Organization
  20. Daniels and Nemenman, 2015
  21. Daniels and Nemenman, 2015a
  22. De Ronde et al., 2009
  23. Decoding Spike Trains
  24. Deep Lab Cut: markerless movement analysis made simple
  25. Diagnostics using microarray data
  26. Dresigmeyer et al., 2008
  27. E. coli chemoreceptor: mesoscopic model
  28. Edwards et al., 2007
  29. Ellison et al., 2016
  30. Entropy Estimation
  31. Entropy estimation methods
  32. Establishing causality
  33. FAQ
  34. First q-bio Conference: Employment board
  35. First q-bio Conference: Participants
  36. First q-bio Conference: Program
  37. First q-bio Conference: Program Details
  38. First q-bio Summer School: Classrooms
  39. First q-bio Summer School: Gene Regulation
  40. First q-bio Summer School: Other Topics in Biological Modeling
  41. First q-bio Summer School: Participants
  42. First q-bio Summer School: Program
  43. First q-bio Summer School: School Hotel
  44. First q-bio Summer School: Signal Transduction Mechanisms
  45. First q-bio Summer School: Stochasticity in Biochemistry and Systems Biology
  46. Gintautas et al., 2011
  47. Group Picture 2012
  48. Group Picture 2013
  49. Group Picture 2014
  50. Group Picture 2016
  51. Group seminar / Journal club
  52. Hlavacek et al., 2015
  53. Holmes et al., 2017
  54. Holy and Nemenman, 2002
  55. INemenman
  56. Ilya Nemenman
  57. Individuality in Movement and Locomotion: From equations to interventions
  58. Individuality in risk-tolerance and learning effects in non-steady locomotion of guinea fowl
  59. Information Bottleneck Method
  60. Information processing in biological systems
  61. Installing Octave on your PC and Mac
  62. Issues
  63. Kominis and Nemenman, 1997
  64. Lab Members
  65. Learning, adaptation, and adaptive behaviors
  66. Leung et al., 2016
  67. Levchenko and Nemenman, 2014
  68. Locomotion and Movement Workshop 2020: Posters
  69. Margolin et al., 2004b
  70. Margolin et al., 2006a
  71. Margolin et al., 2006b
  72. Margolin et al., 2010
  73. Merchan and Nemenman, 2015
  74. Michaelis-Menten reaction: pump current and other stochastic effects
  75. Minkevich and Nemenman, 1995a
  76. Minkevich and Nemenman, 1995b
  77. Mugler et al., 2008
  78. Mugler et al., 2009
  79. Mugler et al., 2015
  80. Munsky et al., 2009
  81. Naud et al., 1999
  82. Nemenman, 2004
  83. Nemenman, 2005
  84. Nemenman, 2011b
  85. Nemenman, 2012
  86. Nemenman, 2012a
  87. Nemenman, 2015
  88. Nemenman-filtering
  89. Nemenman and Bialek, 2002
  90. Nemenman and Silbergleit, 1999
  91. Nemenman and Singh, 2015
  92. Nemenman and Wiggins
  93. Nemenman et al.
  94. Nemenman et al., 2002
  95. Nemenman et al., 2004
  96. Nemenman et al., 2007a
  97. Nemenman et al., 2008
  98. Nemenman et al., 2008a
  99. Nemenman et al., 2009
  100. Nemenman et al., 2010
  101. Nemenman et al., 2011
  102. Nemenman et al., 2012
  103. Nemenman et al., 2013
  104. Nemenman et al., 2014
  105. Nemenman et al., 2015
  106. News
  107. Open positions
  108. Otwinowski and Nemenman, 2013
  109. Otwinowski et al., 2011
  110. P53 regulation
  111. Personal Pages
  112. Ph. D. Thesis
  113. Physics 190, 2015: Discussion Leaders
  114. Physics 190, 2015: Freshman Seminar: Where do laws of nature come from?
  115. Physics 190, 2015: Syllabus
  116. Physics 212, 2016: Computational Modeling For Scientists And Engineers
  117. Physics 212, 2016: Syllabus
  118. Physics 212, 2017: Computational Modeling For Scientists And Engineers
  119. Physics 212, 2017: Lab 10
  120. Physics 212, 2017: Lab 12
  121. Physics 212, 2017: Lab 4
  122. Physics 212, 2017: Lab 5: Starting with Project 2
  123. Physics 212, 2017: Lab 7
  124. Physics 212, 2017: Lecture 10
  125. Physics 212, 2017: Lecture 11: Good coding practices
  126. Physics 212, 2017: Lecture 12: More Python: Scopes and all that
  127. Physics 212, 2017: Lecture 13
  128. Physics 212, 2017: Lecture 14
  129. Physics 212, 2017: Lecture 15
  130. Physics 212, 2017: Lecture 18: Introduction to randomness. How are pseudo-random numbers generated?
  131. Physics 212, 2017: Lecture 1 - Introduction
  132. Physics 212, 2017: Lecture 2
  133. Physics 212, 2017: Lecture 23
  134. Physics 212, 2017: Lecture 24
  135. Physics 212, 2017: Lecture 25
  136. Physics 212, 2017: Lecture 3 - The Modeling Process
  137. Physics 212, 2017: Lecture 7
  138. Physics 212, 2017: Lecture 8
  139. Physics 212, 2017: Lecture 9: Errors
  140. Physics 212, 2017: Lectures 5, 6
  141. Physics 212, 2017: Syllabus
  142. Physics 212, 2018: Computational Modeling For Scientists And Engineers
  143. Physics 212, 2018: Lab 11
  144. Physics 212, 2018: Lab 12
  145. Physics 212, 2018: Lecture 1
  146. Physics 212, 2018: Lecture 10
  147. Physics 212, 2018: Lecture 11
  148. Physics 212, 2018: Lecture 12
  149. Physics 212, 2018: Lecture 13
  150. Physics 212, 2018: Lecture 14
  151. Physics 212, 2018: Lecture 15
  152. Physics 212, 2018: Lecture 17
  153. Physics 212, 2018: Lecture 18
  154. Physics 212, 2018: Lecture 19
  155. Physics 212, 2018: Lecture 2
  156. Physics 212, 2018: Lecture 21
  157. Physics 212, 2018: Lecture 22
  158. Physics 212, 2018: Lecture 23
  159. Physics 212, 2018: Lecture 24
  160. Physics 212, 2018: Lecture 25
  161. Physics 212, 2018: Lecture 3
  162. Physics 212, 2018: Lectures 4
  163. Physics 212, 2018: Lectures 6
  164. Physics 212, 2018: Lectures 7
  165. Physics 212, 2018: Lectures 8
  166. Physics 212, 2018: Lectures 9
  167. Physics 212, 2018: Syllabus
  168. Physics 212, 2019: Computational Modeling For Scientists And Engineers
  169. Physics 212, 2019: Lecture 1
  170. Physics 212, 2019: Lecture 10
  171. Physics 212, 2019: Lecture 11
  172. Physics 212, 2019: Lecture 12
  173. Physics 212, 2019: Lecture 13
  174. Physics 212, 2019: Lecture 14
  175. Physics 212, 2019: Lecture 15
  176. Physics 212, 2019: Lecture 16
  177. Physics 212, 2019: Lecture 17
  178. Physics 212, 2019: Lecture 18
  179. Physics 212, 2019: Lecture 19
  180. Physics 212, 2019: Lecture 2
  181. Physics 212, 2019: Lecture 20
  182. Physics 212, 2019: Lecture 22
  183. Physics 212, 2019: Lecture 3
  184. Physics 212, 2019: Lecture 4
  185. Physics 212, 2019: Lecture 5
  186. Physics 212, 2019: Lecture 6
  187. Physics 212, 2019: Lecture 7
  188. Physics 212, 2019: Lecture 8
  189. Physics 212, 2019: Lecture 9
  190. Physics 212, 2019: Syllabus
  191. Physics 212, 2020: Computational Modeling For Scientists And Engineers
  192. Physics 212, 2020: Syllabus
  193. Physics 380, 2010: Basic Probability Theory
  194. Physics 380, 2010: Coding Theorems
  195. Physics 380, 2010: Fourier Analysis
  196. Physics 380, 2010: Information, Gambling, and Population Biology
  197. Physics 380, 2010: Information Processing in Biology
  198. Physics 380, 2010: Information Theory
  199. Physics 380, 2010: Introduction
  200. Physics 380, 2010: Linear Response Theory
  201. Physics 380, 2010: Random Walks
  202. Physics 380, 2011: Block four: Adaptation
  203. Physics 380, 2011: Block one: Biological information processing is probabilistic
  204. Physics 380, 2011: Block three: Dynamical Information Processing
  205. Physics 380, 2011: Block two: Information theory in biological signaling
  206. Physics 380, 2011: Homework 1
  207. Physics 380, 2011: Homework 10
  208. Physics 380, 2011: Homework 2
  209. Physics 380, 2011: Homework 3
  210. Physics 380, 2011: Homework 4
  211. Physics 380, 2011: Homework 5
  212. Physics 380, 2011: Homework 6
  213. Physics 380, 2011: Homework 7
  214. Physics 380, 2011: Homework 8
  215. Physics 380, 2011: Homework 9
  216. Physics 380, 2011: Information Processing in Biology
  217. Physics 380, 2011: Lecture 1
  218. Physics 380, 2011: Lecture 10
  219. Physics 380, 2011: Lecture 11
  220. Physics 380, 2011: Lecture 12
  221. Physics 380, 2011: Lecture 13
  222. Physics 380, 2011: Lecture 14
  223. Physics 380, 2011: Lecture 15
  224. Physics 380, 2011: Lecture 16
  225. Physics 380, 2011: Lecture 17
  226. Physics 380, 2011: Lecture 18
  227. Physics 380, 2011: Lecture 19
  228. Physics 380, 2011: Lecture 2
  229. Physics 380, 2011: Lecture 21
  230. Physics 380, 2011: Lecture 22
  231. Physics 380, 2011: Lecture 23
  232. Physics 380, 2011: Lecture 24
  233. Physics 380, 2011: Lecture 25
  234. Physics 380, 2011: Lecture 26
  235. Physics 380, 2011: Lecture 27
  236. Physics 380, 2011: Lecture 3
  237. Physics 380, 2011: Lecture 4
  238. Physics 380, 2011: Lecture 5
  239. Physics 380, 2011: Lecture 6
  240. Physics 380, 2011: Lecture 7
  241. Physics 380, 2011: Lecture 8
  242. Physics 380, 2011: Lecture 9
  243. Physics 380, 2012: Homework 11
  244. Physics 380, 2012: Homework 12
  245. Physics 434, 2012: Block one: Biological information processing is probabilistic
  246. Physics 434, 2012: Block three: Dynamical Information Processing
  247. Physics 434, 2012: Block two: Information theory in biological signaling
  248. Physics 434, 2012: Homework 1
  249. Physics 434, 2012: Homework 10
  250. Physics 434, 2012: Homework 2

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