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  • Physics 434, 2015: Physical Biology
    *HW 1 posted -- make it a habit of checking the class web page. [[User:Ilya|Ilya]] 10:11, 2 September 2015 (EDT) ...Matlab during this class (no prior programming experience necessary). The main ideas that we will explore are the ideas of dynamics, randomness, control,
    21 KB (2,713 words) - 12:28, 4 July 2018
  • Physics 212, 2016: Computational Modeling For Scientists And Engineers
    *'''Main Textbook''': A Shiflet and G Shiflet, ''Introduction to Computational Model ...ls/dla/ here]. Implement DLA starting with one point on an otherwise empty page. Illustrate your DLA clusters. Simulate a few of these clusters and plot ho
    20 KB (3,264 words) - 12:28, 4 July 2018
  • Physics 380, 2011: Homework 1
    ...tary session. Let's start with writing a program that will demonstrate the main topic of our Lecture 1 -- that much of biological information processing is ...cs at low Reynolds number'' article by Purcell (find it on the main course page). Find the scallop theorem there, which tells that a microscopic organism c
    6 KB (1,050 words) - 12:28, 4 July 2018
  • Physics 380, 2011: Lecture 8
    I suggest you read the article by Paulsson (2004) on the main course page and the Wiener process Wikipedia article linked from there. You may also wa ====Main Lecture====
    6 KB (1,080 words) - 12:28, 4 July 2018
  • Physics 434, 2012: Homework 1
    ...tary session. Let's start with writing a program that will demonstrate the main topic of our Lecture 1 -- that much of biological information processing is ...cs at low Reynolds number'' article by Purcell (find it on the main course page). Find the scallop theorem there, which tells that a microscopic organism c
    7 KB (1,160 words) - 12:28, 4 July 2018
  • Physics 434, 2014: Introduction
    ...language of computer simulations to bring all of you together to the same page. None of you are probably experts in programming, but this is OK, as you wi ...tant parts of biology and structural biology, development, or ecology. The main questions to be asked in the whole course (not necessarily in this order):
    20 KB (3,449 words) - 12:28, 4 July 2018
  • Physics 434, 2014: Homework 1
    ...the semester. Let's start with writing a program that will demonstrate the main topic of our Lecture 1 -- that much of biological information processing is ...cs at low Reynolds number'' article by Purcell (find it on the main course page). Find the scallop theorem there, which tells that a microscopic organism c
    8 KB (1,447 words) - 12:28, 4 July 2018
  • Physics 190, 2015: Syllabus
    ;Class Web Page: http://nemenmanlab.org/~ilya/index.php/Physics_180,_2015:_Freshman_Seminar ...gnment, when given, ''before'' the class, and to write a short, about half-page long summary of the assignment, posting it on Blackboard ''at least two hou
    6 KB (1,030 words) - 12:28, 4 July 2018
  • Physics 434, 2015: Syllabus
    ;Class Web Page: http://nemenmanlab.org/~ilya/index.php/Physics_434,_2015:_Physical_Biology ...Matlab during this class (no prior programming experience necessary). The main ideas that we will explore are the ideas of dynamics, randomness, control,
    13 KB (2,100 words) - 12:28, 4 July 2018
  • Physics 434, 2015: Homework 1
    ...cs at low Reynolds number'' article by Purcell (find it on the main course page). Find the scallop theorem there, which tells that a microscopic organism c
    5 KB (933 words) - 12:28, 4 July 2018
  • Physics 212, 2016: Syllabus
    ;Class Web Page: http://nemenmanlab.org/~ilya/index.php/Physics_212,_2016:_Computational_Mo *'''Main Textbook''': A Shiflet and G Shiflet, ''Introduction to Computational Model
    10 KB (1,574 words) - 12:28, 4 July 2018
  • Physics 434, Lecture 1 additional notes
    ...language of computer simulations to bring all of you together to the same page. None of you are probably experts in programming, but this is OK, as you wi ...st through most sections of the class. In the context of cell biology, our main hero will be the ''E. coli'' cell, and specifically its chemotactic behavio
    20 KB (3,433 words) - 10:11, 19 January 2022
  • Physics 434, 2016: Syllabus
    ;Class Web Page: http://nemenmanlab.org/~ilya/index.php/Physics_434,_2016:_Physical_Biology ...rogramming experience necessary, but PHYS 212 / BIOL 212 recommended). The main ideas that we will explore are the ideas of dynamics, randomness, control,
    14 KB (2,139 words) - 12:28, 4 July 2018
  • Physics 434, 2016: Homework 1
    ...cs at low Reynolds number'' article by Purcell (find it on the main course page). Find the scallop theorem there, which tells that a microscopic organism c
    5 KB (933 words) - 12:28, 4 July 2018
  • Physics 212, 2017: Syllabus
    ;Class Web Page: http://nemenmanlab.org/~ilya/index.php/Physics_212,_2017:_Computational_Mo *'''Main Textbook''': J Kinder and P Nelson, ''Student Guide to Python for Physical
    11 KB (1,757 words) - 12:28, 4 July 2018
  • Physics 212, 2018: Syllabus
    ;Class Web Page: http://nemenmanlab.org/~ilya/index.php/Physics_212,_2018:_Computational_Mo *'''Main Textbook''': J Kinder and P Nelson, ''Student Guide to Python for Physical
    12 KB (1,917 words) - 12:28, 4 July 2018
  • Physics 212, 2019: Syllabus
    ;Class Web Page: http://nemenmanlab.org/~ilya/index.php/Physics_212,_2019:_Computational_Mo *'''Main Textbook''': J Kinder and P Nelson, ''Student Guide to Python for Physical
    14 KB (2,249 words) - 16:35, 3 February 2019
  • Physics 212, 2020: Syllabus
    ;Class Web Page: http://nemenmanlab.org/~ilya/index.php/Physics_212,_2020:_Computational_Mo *'''Main Textbook''': J Kinder and P Nelson, ''Student Guide to Python for Physical
    19 KB (3,036 words) - 09:52, 22 March 2020
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