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- Physics 380, 2010: Information Processing in Biology (2 revisions)
- Physics 380, 2011: Homework 7 (2 revisions)
- Physics 380, 2011: Lecture 21 (2 revisions)
- Physics 434, 2012: Block one: Biological information processing is probabilistic (2 revisions)
- Bialek et al., 2001a (2 revisions)
- Physics 434, 2012: Lecture 14 (2 revisions)
- Decoding Spike Trains (2 revisions)
- First q-bio Summer School: Gene Regulation (2 revisions)
- Physics 434, 2014: Projects (2 revisions)
- Physics 434, 2015: Physical Biology (2 revisions)
- Margolin et al., 2006a (2 revisions)
- Physics 434, 2016: Homework 9 (2 revisions)
- Nemenman, 2012a (2 revisions)
- Physics 511A, 2012: Chapter 6, Volume 2. Electromagnetic waves (2 revisions)
- Nemenman et al., 2012 (2 revisions)
- Physics 511A, 2013: Chapter 7, Volume 2. Propagation of light (2 revisions)
- Physics 212, 2017: Computational Modeling For Scientists And Engineers (2 revisions)
- Physics 511A, 2014: Chapter 7, Volume 2. Propagation of light (2 revisions)
- Physics 212, 2017: Lecture 24 (2 revisions)
- Reverse engineering cellular networks (2 revisions)
- Physics 212, 2018: Lecture 14 (2 revisions)
- Stochasticity in regulatory networks (2 revisions)
- Wiggins and Nemenman, 2003 (2 revisions)
- Physics 380, 2010: Information Theory (2 revisions)
- Physics 380, 2011: Homework 8 (2 revisions)
- Physics 380, 2011: Lecture 22 (2 revisions)
- Physics 434, 2012: Block three: Dynamical Information Processing (2 revisions)
- Bialek et al., 2001b (2 revisions)
- Physics 434, 2012: Lecture 15 (2 revisions)
- Physics 434, 2014: Homework 1 (2 revisions)
- First q-bio Summer School: Other Topics in Biological Modeling (2 revisions)
- Physics 434, 2014: Random walks and diffusion (2 revisions)
- Physics 434, 2015: Project 1, Luria-Delbruck, Revisited (2 revisions)
- Margolin et al., 2006b (2 revisions)
- Physics 434, 2016: Law of large numbers (2 revisions)
- Nemenman, 2015 (2 revisions)
- Physics 511A, 2012: Chapter 7, Volume 2. Propagation of light (2 revisions)
- Nemenman et al., 2013 (2 revisions)
- Physics 511A, 2013: Chapter 8, Volume 2. The field of moving charges (2 revisions)
- Physics 212, 2017: Lab 10 (2 revisions)
- Physics 511A, 2014: Chapter 8, Volume 2. The field of moving charges (2 revisions)
- Physics 212, 2017: Lecture 25 (2 revisions)
- Rise of the 140 character paper (2 revisions)
- Physics 212, 2018: Lecture 15 (2 revisions)
- Stromberg et al., 2013 (2 revisions)
- Physics 212, 2018: Syllabus (2 revisions)
- Ziv et al., 2007 (2 revisions)
- Physics 380, 2010: Introduction (2 revisions)
- Physics 380, 2011: Homework 9 (2 revisions)
- Physics 380, 2011: Lecture 23 (2 revisions)