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- Diagnostics using microarray data
- Dresigmeyer et al., 2008
- E. coli chemoreceptor: mesoscopic model
- Edwards et al., 2007
- Ellison et al., 2016
- Entropy Estimation
- Entropy estimation methods
- Establishing causality
- First q-bio Conference: Employment board
- First q-bio Conference: Participants
- First q-bio Conference: Program
- First q-bio Conference: Program Details
- First q-bio Summer School: Classrooms
- First q-bio Summer School: Gene Regulation
- First q-bio Summer School: Other Topics in Biological Modeling
- First q-bio Summer School: Participants
- First q-bio Summer School: Program
- First q-bio Summer School: School Hotel
- First q-bio Summer School: Signal Transduction Mechanisms
- First q-bio Summer School: Stochasticity in Biochemistry and Systems Biology
- Gintautas et al., 2011
- Group Picture 2012
- Group Picture 2013
- Group Picture 2014
- Group seminar / Journal club
- Hlavacek et al., 2015
- Holmes et al., 2017
- Holy and Nemenman, 2002
- Information Bottleneck Method
- Information processing in biological systems
- Installing Octave on your PC and Mac
- Issues
- Kominis and Nemenman, 1997
- Learning, adaptation, and adaptive behaviors
- Leung et al., 2016
- Levchenko and Nemenman, 2014
- Margolin et al., 2004b
- Margolin et al., 2006a
- Margolin et al., 2006b
- Margolin et al., 2010
- Merchan and Nemenman, 2015
- Michaelis-Menten reaction: pump current and other stochastic effects
- Minkevich and Nemenman, 1995a
- Minkevich and Nemenman, 1995b
- Mugler et al., 2008
- Mugler et al., 2009
- Mugler et al., 2015
- Munsky et al., 2009
- Naud et al., 1999
- Nemenman, 2004
- Nemenman, 2005
- Nemenman, 2011b
- Nemenman, 2012
- Nemenman, 2012a
- Nemenman, 2015
- Nemenman-filtering
- Nemenman and Bialek, 2002
- Nemenman and Silbergleit, 1999
- Nemenman and Singh, 2015
- Nemenman and Wiggins
- Nemenman et al.
- Nemenman et al., 2002
- Nemenman et al., 2004
- Nemenman et al., 2007a
- Nemenman et al., 2008
- Nemenman et al., 2008a
- Nemenman et al., 2009
- Nemenman et al., 2010
- Nemenman et al., 2011
- Nemenman et al., 2012
- Nemenman et al., 2013
- Nemenman et al., 2014
- Nemenman et al., 2015
- News
- Otwinowski and Nemenman, 2013
- Otwinowski et al., 2011
- P53 regulation
- Personal Pages
- Ph. D. Thesis
- Physics 190, 2015: Discussion Leaders
- Physics 190, 2015: Syllabus
- Physics 212, 2016: Computational Modeling For Scientists And Engineers
- Physics 212, 2016: Syllabus
- Physics 212, 2017: Computational Modeling For Scientists And Engineers
- Physics 212, 2017: Lab 10
- Physics 212, 2017: Lab 12
- Physics 212, 2017: Lab 4
- Physics 212, 2017: Lab 5: Starting with Project 2
- Physics 212, 2017: Lab 7
- Physics 212, 2017: Lecture 10
- Physics 212, 2017: Lecture 11: Good coding practices
- Physics 212, 2017: Lecture 12: More Python: Scopes and all that
- Physics 212, 2017: Lecture 13
- Physics 212, 2017: Lecture 14
- Physics 212, 2017: Lecture 15
- Physics 212, 2017: Lecture 18: Introduction to randomness. How are pseudo-random numbers generated?
- Physics 212, 2017: Lecture 1 - Introduction
- Physics 212, 2017: Lecture 2
- Physics 212, 2017: Lecture 23
- Physics 212, 2017: Lecture 24