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- Physics 434, 2014: Scripts
- Physics 434, 2014: Search and first passage times
- Physics 434, 2014: Stochastic chemical kinetics
- Physics 434, 2014: Syllabus
- Physics 434, 2015: Homework 1
- Physics 434, 2015: Homework 10
- Physics 434, 2015: Homework 2
- Physics 434, 2015: Homework 3
- Physics 434, 2015: Homework 4
- Physics 434, 2015: Homework 5
- Physics 434, 2015: Homework 6
- Physics 434, 2015: Homework 7
- Physics 434, 2015: Homework 8
- Physics 434, 2015: Homework 9
- Physics 434, 2015: Introduction to Information theory
- Physics 434, 2015: Physical Biology
- Physics 434, 2015: Project 1, Luria-Delbruck, Revisited
- Physics 434, 2015: Project 2 -- Multistability in gene expression
- Physics 434, 2015: Project 3 -- Who controls whom?
- Physics 434, 2015: Project 4 -- Noise Propagation
- Physics 434, 2015: Project 5
- Physics 434, 2015: Syllabus
- Physics 434, 2016: Discrete randomness
- Physics 434, 2016: Homework 1
- Physics 434, 2016: Homework 2
- Physics 434, 2016: Homework 3
- Physics 434, 2016: Homework 4
- Physics 434, 2016: Homework 5
- Physics 434, 2016: Homework 6
- Physics 434, 2016: Homework 7
- Physics 434, 2016: Homework 8
- Physics 434, 2016: Homework 9
- Physics 434, 2016: Law of large numbers
- Physics 434, 2016: Physical Biology
- Physics 434, 2016: Project 1
- Physics 434, 2016: Project 2
- Physics 434, 2016: Syllabus
- Physics 511A, 2011: Chapter 1, Volume 2. The principle of relativity
- Physics 511A, 2012: Chapter 1, Volume 8. Electrostatics of conductors
- Physics 511A, 2012: Chapter 2, Volume 2. Relativistic mechanics
- Physics 511A, 2012: Chapter 2, Volume 8. Electrostatics of dielectric
- Physics 511A, 2012: Chapter 3, Volume 2. Charges in electromagnetic field
- Physics 511A, 2012: Chapter 3, Volume 8. Steady current
- Physics 511A, 2012: Chapter 4, Volume 2. Electromagnetic field equations
- Physics 511A, 2012: Chapter 4, Volume 8. Static magnetic field
- Physics 511A, 2012: Chapter 5, Volume 2. Constant electromagnetic fields
- Physics 511A, 2012: Chapter 6, Volume 2. Electromagnetic waves
- Physics 511A, 2012: Chapter 7, Volume 2. Propagation of light
- Physics 511A, 2012: Chapter 8, Volume 2. The field of moving charges
- Physics 511A, 2012: Chapter 9, Volume 2. Radiation of electromagnetic waves
- Physics 511A, 2012: Graduate Electrodynamics
- Physics 511A, 2012: Waves in media
- Physics 511A, 2013: Chapter 1, Volume 2. The principle of relativity
- Physics 511A, 2013: Chapter 1, Volume 8. Electrostatics of conductors
- Physics 511A, 2013: Chapter 2, Volume 2. Relativistic mechanics
- Physics 511A, 2013: Chapter 2, Volume 8. Electrostatics of dielectric
- Physics 511A, 2013: Chapter 3, Volume 2. Charges in electromagnetic field
- Physics 511A, 2013: Chapter 3, Volume 8. Steady current
- Physics 511A, 2013: Chapter 4, Volume 2. Electromagnetic field equations
- Physics 511A, 2013: Chapter 4, Volume 8. Static magnetic field
- Physics 511A, 2013: Chapter 5, Volume 2. Constant electromagnetic fields
- Physics 511A, 2013: Chapter 6, Volume 2. Electromagnetic waves
- Physics 511A, 2013: Chapter 7, Volume 2. Propagation of light
- Physics 511A, 2013: Chapter 8, Volume 2. The field of moving charges
- Physics 511A, 2013: Chapter 9, Volume 2. Radiation of electromagnetic waves
- Physics 511A, 2013: Graduate Electrodynamics
- Physics 511A, 2013: Waves in media
- Physics 511A, 2014: Chapter 1, Volume 2. The principle of relativity
- Physics 511A, 2014: Chapter 1, Volume 8. Electrostatics of conductors
- Physics 511A, 2014: Chapter 2, Volume 2. Relativistic mechanics
- Physics 511A, 2014: Chapter 2, Volume 8. Electrostatics of dielectric
- Physics 511A, 2014: Chapter 3, Volume 2. Charges in electromagnetic field
- Physics 511A, 2014: Chapter 3, Volume 8. Steady current
- Physics 511A, 2014: Chapter 4, Volume 2. Electromagnetic field equations
- Physics 511A, 2014: Chapter 4, Volume 8. Static magnetic field
- Physics 511A, 2014: Chapter 5, Volume 2. Constant electromagnetic fields
- Physics 511A, 2014: Chapter 5, Volume 8. Ferromagnetism and antiferromagnetism
- Physics 511A, 2014: Chapter 6, Volume 2. Electromagnetic waves
- Physics 511A, 2014: Chapter 7, Volume 2. Propagation of light
- Physics 511A, 2014: Chapter 8, Volume 2. The field of moving charges
- Physics 511A, 2014: Chapter 9, Volume 2. Radiation of electromagnetic waves
- Physics 511A, 2014: Graduate Electrodynamics
- Physics 511A, 2014: Superconductivity
- Physics 511A, 2014: Waves in media
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- Reverse-engineering algorithms benchmarks
- Reverse engineering cellular networks
- Rise of the 140 character paper
- Schwab et al., 2014
- Silbergleit et al., 2003a
- Silbergleit et al., 2003b
- Simpler methods for High Throughput Data analysis
- Singh et al., 2014
- Sinitsyn and Nemenman, 2007
- Sinitsyn and Nemenman, 2007a
- Sinitsyn and Nemenman, 2010
- Sinitsyn et al., 2009
- Smart Thoughts From Smart People
- Smith et al., 2016
- Srivastava et al., 2017
- Stochastic dynamics on biological networks
- Stochastic path integral
- Stochasticity in regulatory networks
- Stromberg et al., 2013
- Tanase-Nicola and Nemenman, 2011
- Tang et al., 2014
- Tchernookov and Nemenman, 2013
- Teuscher et al, 2008
- The Berry phase in stochastic kinetics
- Tools and approximations for stochastic analysis
- Visual neural computation
- Wang et al., 2005
- Wang et al., 2006
- Wang et al., 2007
- Wang et al., 2009
- Wei et al., 2011
- Wiggins and Nemenman, 2003
- Ziv et al., 2007
