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- About our work
- Adler et al., 2000
- Bandaru et al., 2011
- Behavioral Analysis
- Bel and Nemenman, 2009
- Bel et al., 2010
- Bialek et al., 2001a
- Bialek et al., 2001b
- CNS Clinic 2012: Dynamic Clamping
- CNS Clinic 2012: Information theory for understanding the neural code
- CNS Clinic 2012: Ins and outs of script programming with Genesis
- CNS Clinic 2012: Model fitting with neural data: Stories from the trenches
- CNS Clinic 2012: Principal Components Analysis of neural and behavioral data
- CNS Clinic 2012: Spike train analysis
- Calendar: Travel and Visitors
- Cheng et al., 2013
- Cheong et al., 2011
- Computational Neuroscience Methods Clinic, 2012
- Conference Organization
- Daniels and Nemenman, 2015
- Daniels and Nemenman, 2015a
- De Ronde et al., 2009
- Decoding Spike Trains
- Deep Lab Cut: markerless movement analysis made simple
- Diagnostics using microarray data
- Dresigmeyer et al., 2008
- E. coli chemoreceptor: mesoscopic model
- Edwards et al., 2007
- Ellison et al., 2016
- Entropy Estimation
- Entropy estimation methods
- Establishing causality
- FAQ
- First q-bio Conference: Employment board
- First q-bio Conference: Participants
- First q-bio Conference: Program
- First q-bio Conference: Program Details
- First q-bio Summer School: Classrooms
- First q-bio Summer School: Gene Regulation
- First q-bio Summer School: Other Topics in Biological Modeling
- First q-bio Summer School: Participants
- First q-bio Summer School: Program
- First q-bio Summer School: School Hotel
- First q-bio Summer School: Signal Transduction Mechanisms
- First q-bio Summer School: Stochasticity in Biochemistry and Systems Biology
- Gintautas et al., 2011
- Group Picture 2012
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- Group Picture 2016
- Group seminar / Journal club
- Hlavacek et al., 2015
- Holmes et al., 2017
- Holy and Nemenman, 2002
- INemenman
- Ilya Nemenman
- Individuality in Movement and Locomotion: From equations to interventions
- Individuality in risk-tolerance and learning effects in non-steady locomotion of guinea fowl
- Information Bottleneck Method
- Information processing in biological systems
- Installing Octave on your PC and Mac
- Issues
- Kominis and Nemenman, 1997
- Lab Members
- Learning, adaptation, and adaptive behaviors
- Leung et al., 2016
- Levchenko and Nemenman, 2014
- Locomotion and Movement Workshop 2020: Posters
- Margolin et al., 2004b
- Margolin et al., 2006a
- Margolin et al., 2006b
- Margolin et al., 2010
- Merchan and Nemenman, 2015
- Michaelis-Menten reaction: pump current and other stochastic effects
- Minkevich and Nemenman, 1995a
- Minkevich and Nemenman, 1995b
- Mugler et al., 2008
- Mugler et al., 2009
- Mugler et al., 2015
- Munsky et al., 2009
- Naud et al., 1999
- Nemenman, 2004
- Nemenman, 2005
- Nemenman, 2011b
- Nemenman, 2012
- Nemenman, 2012a
- Nemenman, 2015
- Nemenman-filtering
- Nemenman and Bialek, 2002
- Nemenman and Silbergleit, 1999
- Nemenman and Singh, 2015
- Nemenman and Wiggins
- Nemenman et al.
- Nemenman et al., 2002
- Nemenman et al., 2004
- Nemenman et al., 2007a
- Nemenman et al., 2008
- Nemenman et al., 2008a
- Nemenman et al., 2009
- Nemenman et al., 2010
- Nemenman et al., 2011
- Nemenman et al., 2012
- Nemenman et al., 2013
- Nemenman et al., 2014
- Nemenman et al., 2015
- News
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- Otwinowski and Nemenman, 2013
- Otwinowski et al., 2011
- P53 regulation
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- Ph. D. Thesis
- Physics 190, 2015: Discussion Leaders
- Physics 190, 2015: Freshman Seminar: Where do laws of nature come from?
- Physics 190, 2015: Syllabus
- Physics 212, 2016: Computational Modeling For Scientists And Engineers
- Physics 212, 2016: Syllabus
- Physics 212, 2017: Computational Modeling For Scientists And Engineers
- Physics 212, 2017: Lab 10
- Physics 212, 2017: Lab 12
- Physics 212, 2017: Lab 4
- Physics 212, 2017: Lab 5: Starting with Project 2
- Physics 212, 2017: Lab 7
- Physics 212, 2017: Lecture 10
- Physics 212, 2017: Lecture 11: Good coding practices
- Physics 212, 2017: Lecture 12: More Python: Scopes and all that
- Physics 212, 2017: Lecture 13
- Physics 212, 2017: Lecture 14
- Physics 212, 2017: Lecture 15
- Physics 212, 2017: Lecture 18: Introduction to randomness. How are pseudo-random numbers generated?
- Physics 212, 2017: Lecture 1 - Introduction
- Physics 212, 2017: Lecture 2
- Physics 212, 2017: Lecture 23
- Physics 212, 2017: Lecture 24
- Physics 212, 2017: Lecture 25
- Physics 212, 2017: Lecture 3 - The Modeling Process
- Physics 212, 2017: Lecture 7
- Physics 212, 2017: Lecture 8
- Physics 212, 2017: Lecture 9: Errors
- Physics 212, 2017: Lectures 5, 6
- Physics 212, 2017: Syllabus
- Physics 212, 2018: Computational Modeling For Scientists And Engineers
- Physics 212, 2018: Lab 11
- Physics 212, 2018: Lab 12
- Physics 212, 2018: Lecture 1
- Physics 212, 2018: Lecture 10
- Physics 212, 2018: Lecture 11
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- Physics 212, 2018: Lecture 14
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- Physics 212, 2018: Lecture 17
- Physics 212, 2018: Lecture 18
- Physics 212, 2018: Lecture 19
- Physics 212, 2018: Lecture 2
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- Physics 212, 2018: Lecture 23
- Physics 212, 2018: Lecture 24
- Physics 212, 2018: Lecture 25
- Physics 212, 2018: Lecture 3
- Physics 212, 2018: Lectures 4
- Physics 212, 2018: Lectures 6
- Physics 212, 2018: Lectures 7
- Physics 212, 2018: Lectures 8
- Physics 212, 2018: Lectures 9
- Physics 212, 2018: Syllabus
- Physics 212, 2019: Computational Modeling For Scientists And Engineers
- Physics 212, 2019: Lecture 1
- Physics 212, 2019: Lecture 10
- Physics 212, 2019: Lecture 11
- Physics 212, 2019: Lecture 12
- Physics 212, 2019: Lecture 13
- Physics 212, 2019: Lecture 14
- Physics 212, 2019: Lecture 15
- Physics 212, 2019: Lecture 16
- Physics 212, 2019: Lecture 17
- Physics 212, 2019: Lecture 18
- Physics 212, 2019: Lecture 19
- Physics 212, 2019: Lecture 2
- Physics 212, 2019: Lecture 20
- Physics 212, 2019: Lecture 22
- Physics 212, 2019: Lecture 3
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- Physics 212, 2019: Lecture 7
- Physics 212, 2019: Lecture 8
- Physics 212, 2019: Lecture 9
- Physics 212, 2019: Syllabus
- Physics 212, 2020: Computational Modeling For Scientists And Engineers
- Physics 212, 2020: Syllabus
- Physics 380, 2010: Basic Probability Theory
- Physics 380, 2010: Coding Theorems
- Physics 380, 2010: Fourier Analysis
- Physics 380, 2010: Information, Gambling, and Population Biology
- Physics 380, 2010: Information Processing in Biology
- Physics 380, 2010: Information Theory
- Physics 380, 2010: Introduction
- Physics 380, 2010: Linear Response Theory
- Physics 380, 2010: Random Walks
- Physics 380, 2011: Block four: Adaptation
- Physics 380, 2011: Block one: Biological information processing is probabilistic
- Physics 380, 2011: Block three: Dynamical Information Processing
- Physics 380, 2011: Block two: Information theory in biological signaling
- Physics 380, 2011: Homework 1
- Physics 380, 2011: Homework 10
- Physics 380, 2011: Homework 2
- Physics 380, 2011: Homework 3
- Physics 380, 2011: Homework 4
- Physics 380, 2011: Homework 5
- Physics 380, 2011: Homework 6
- Physics 380, 2011: Homework 7
- Physics 380, 2011: Homework 8
- Physics 380, 2011: Homework 9
- Physics 380, 2011: Information Processing in Biology
- Physics 380, 2011: Lecture 1
- Physics 380, 2011: Lecture 10
- Physics 380, 2011: Lecture 11
- Physics 380, 2011: Lecture 12
- Physics 380, 2011: Lecture 13
- Physics 380, 2011: Lecture 14
- Physics 380, 2011: Lecture 15
- Physics 380, 2011: Lecture 16
- Physics 380, 2011: Lecture 17
- Physics 380, 2011: Lecture 18
- Physics 380, 2011: Lecture 19
- Physics 380, 2011: Lecture 2
- Physics 380, 2011: Lecture 21
- Physics 380, 2011: Lecture 22
- Physics 380, 2011: Lecture 23
- Physics 380, 2011: Lecture 24
- Physics 380, 2011: Lecture 25
- Physics 380, 2011: Lecture 26
- Physics 380, 2011: Lecture 27
- Physics 380, 2011: Lecture 3
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- Physics 380, 2011: Lecture 5
- Physics 380, 2011: Lecture 6
- Physics 380, 2011: Lecture 7
- Physics 380, 2011: Lecture 8
- Physics 380, 2011: Lecture 9
- Physics 380, 2012: Homework 11
- Physics 380, 2012: Homework 12
- Physics 434, 2012: Block one: Biological information processing is probabilistic
- Physics 434, 2012: Block three: Dynamical Information Processing
- Physics 434, 2012: Block two: Information theory in biological signaling
- Physics 434, 2012: Homework 1
- Physics 434, 2012: Homework 10
- Physics 434, 2012: Homework 2
- Physics 434, 2012: Homework 3
- Physics 434, 2012: Homework 4
- Physics 434, 2012: Homework 5
- Physics 434, 2012: Homework 6
- Physics 434, 2012: Homework 7
- Physics 434, 2012: Homework 8
- Physics 434, 2012: Homework 9
- Physics 434, 2012: Information Processing in Biology
- Physics 434, 2012: Lecture 1
- Physics 434, 2012: Lecture 10
- Physics 434, 2012: Lecture 14
- Physics 434, 2012: Lecture 15
- Physics 434, 2012: Lecture 16
- Physics 434, 2012: Lecture 17
- Physics 434, 2012: Lecture 20
- Physics 434, 2012: Lecture 4
- Physics 434, 2012: Lecture 5
- Physics 434, 2012: Lecture 6
- Physics 434, 2012: Lecture 7
- Physics 434, 2012: Lectures 10-11
- Physics 434, 2012: Lectures 12-13
- Physics 434, 2012: Lectures 2-3
- Physics 434, 2012: Lectures 8, 9
- Physics 434, 2012: Syllabus
- Physics 434, 2014: Block one: Biological information processing is probabilistic
- Physics 434, 2014: Central limit theorem
- Physics 434, 2014: Continuous randomness
- Physics 434, 2014: Homework 1
- Physics 434, 2014: Homework 2
- Physics 434, 2014: Homework 3
- Physics 434, 2014: Homework 4
- Physics 434, 2014: Homework 5
- Physics 434, 2014: Homework 6
- Physics 434, 2014: Homework 7
- Physics 434, 2014: Homework 8
- Physics 434, 2014: Information Processing in Biology
- Physics 434, 2014: Introduction
- Physics 434, 2014: Luria-Delbruck experiment
- Physics 434, 2014: Project 1 -- Multistability and a molecular clock
- Physics 434, 2014: Project 2 -- Who controls whom?
- Physics 434, 2014: Project 3 -- Noise propagation
- Physics 434, 2014: Project 4 -- Luria and Delbruck, take 2
- Physics 434, 2014: Projects
- Physics 434, 2014: Random walks and diffusion
- Physics 434, 2014: Scripts
- Physics 434, 2014: Search and first passage times
- Physics 434, 2014: Stochastic chemical kinetics
- Physics 434, 2014: Syllabus
- Physics 434, 2015: Homework 1
- Physics 434, 2015: Homework 10
- Physics 434, 2015: Homework 2
- Physics 434, 2015: Homework 3
- Physics 434, 2015: Homework 4
- Physics 434, 2015: Homework 5
- Physics 434, 2015: Homework 6
- Physics 434, 2015: Homework 7
- Physics 434, 2015: Homework 8
- Physics 434, 2015: Homework 9
- Physics 434, 2015: Introduction to Information theory
- Physics 434, 2015: Physical Biology
- Physics 434, 2015: Project 1, Luria-Delbruck, Revisited
- Physics 434, 2015: Project 2 -- Multistability in gene expression
- Physics 434, 2015: Project 3 -- Who controls whom?
- Physics 434, 2015: Project 4 -- Noise Propagation
- Physics 434, 2015: Project 5
- Physics 434, 2015: Syllabus
- Physics 434, 2016: Discrete randomness
- Physics 434, 2016: Homework 1
- Physics 434, 2016: Homework 2
- Physics 434, 2016: Homework 3
- Physics 434, 2016: Homework 4
- Physics 434, 2016: Homework 5
- Physics 434, 2016: Homework 6
- Physics 434, 2016: Homework 7
- Physics 434, 2016: Homework 8
- Physics 434, 2016: Homework 9
- Physics 434, 2016: Law of large numbers
- Physics 434, 2016: Physical Biology
- Physics 434, 2016: Project 1
- Physics 434, 2016: Project 2
- Physics 434, 2016: Syllabus
- Physics 434, Lecture 1 additional notes
- Physics 511A, 2011: Chapter 1, Volume 2. The principle of relativity
- Physics 511A, 2012: Chapter 1, Volume 8. Electrostatics of conductors
- Physics 511A, 2012: Chapter 2, Volume 2. Relativistic mechanics
- Physics 511A, 2012: Chapter 2, Volume 8. Electrostatics of dielectric
- Physics 511A, 2012: Chapter 3, Volume 2. Charges in electromagnetic field
- Physics 511A, 2012: Chapter 3, Volume 8. Steady current
- Physics 511A, 2012: Chapter 4, Volume 2. Electromagnetic field equations
- Physics 511A, 2012: Chapter 4, Volume 8. Static magnetic field
- Physics 511A, 2012: Chapter 5, Volume 2. Constant electromagnetic fields
- Physics 511A, 2012: Chapter 6, Volume 2. Electromagnetic waves
- Physics 511A, 2012: Chapter 7, Volume 2. Propagation of light
- Physics 511A, 2012: Chapter 8, Volume 2. The field of moving charges
- Physics 511A, 2012: Chapter 9, Volume 2. Radiation of electromagnetic waves
