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  1. Nemenman et al., 2011
  2. Nemenman et al., 2012
  3. Nemenman et al., 2013
  4. Nemenman et al., 2014
  5. Nemenman et al., 2015
  6. News
  7. Open positions
  8. Otwinowski and Nemenman, 2013
  9. Otwinowski et al., 2011
  10. P53 regulation
  11. Personal Pages
  12. Ph. D. Thesis
  13. Physics 190, 2015: Discussion Leaders
  14. Physics 190, 2015: Freshman Seminar: Where do laws of nature come from?
  15. Physics 190, 2015: Syllabus
  16. Physics 212, 2016: Computational Modeling For Scientists And Engineers
  17. Physics 212, 2016: Syllabus
  18. Physics 212, 2017: Computational Modeling For Scientists And Engineers
  19. Physics 212, 2017: Lab 10
  20. Physics 212, 2017: Lab 12
  21. Physics 212, 2017: Lab 4
  22. Physics 212, 2017: Lab 5: Starting with Project 2
  23. Physics 212, 2017: Lab 7
  24. Physics 212, 2017: Lecture 10
  25. Physics 212, 2017: Lecture 11: Good coding practices
  26. Physics 212, 2017: Lecture 12: More Python: Scopes and all that
  27. Physics 212, 2017: Lecture 13
  28. Physics 212, 2017: Lecture 14
  29. Physics 212, 2017: Lecture 15
  30. Physics 212, 2017: Lecture 18: Introduction to randomness. How are pseudo-random numbers generated?
  31. Physics 212, 2017: Lecture 1 - Introduction
  32. Physics 212, 2017: Lecture 2
  33. Physics 212, 2017: Lecture 23
  34. Physics 212, 2017: Lecture 24
  35. Physics 212, 2017: Lecture 25
  36. Physics 212, 2017: Lecture 3 - The Modeling Process
  37. Physics 212, 2017: Lecture 7
  38. Physics 212, 2017: Lecture 8
  39. Physics 212, 2017: Lecture 9: Errors
  40. Physics 212, 2017: Lectures 5, 6
  41. Physics 212, 2017: Syllabus
  42. Physics 212, 2018: Computational Modeling For Scientists And Engineers
  43. Physics 212, 2018: Lab 11
  44. Physics 212, 2018: Lab 12
  45. Physics 212, 2018: Lecture 1
  46. Physics 212, 2018: Lecture 10
  47. Physics 212, 2018: Lecture 11
  48. Physics 212, 2018: Lecture 12
  49. Physics 212, 2018: Lecture 13
  50. Physics 212, 2018: Lecture 14
  51. Physics 212, 2018: Lecture 15
  52. Physics 212, 2018: Lecture 17
  53. Physics 212, 2018: Lecture 18
  54. Physics 212, 2018: Lecture 19
  55. Physics 212, 2018: Lecture 2
  56. Physics 212, 2018: Lecture 21
  57. Physics 212, 2018: Lecture 22
  58. Physics 212, 2018: Lecture 23
  59. Physics 212, 2018: Lecture 24
  60. Physics 212, 2018: Lecture 25
  61. Physics 212, 2018: Lecture 3
  62. Physics 212, 2018: Lectures 4
  63. Physics 212, 2018: Lectures 6
  64. Physics 212, 2018: Lectures 7
  65. Physics 212, 2018: Lectures 8
  66. Physics 212, 2018: Lectures 9
  67. Physics 212, 2018: Syllabus
  68. Physics 212, 2019: Computational Modeling For Scientists And Engineers
  69. Physics 212, 2019: Lecture 1
  70. Physics 212, 2019: Lecture 10
  71. Physics 212, 2019: Lecture 11
  72. Physics 212, 2019: Lecture 12
  73. Physics 212, 2019: Lecture 13
  74. Physics 212, 2019: Lecture 14
  75. Physics 212, 2019: Lecture 15
  76. Physics 212, 2019: Lecture 16
  77. Physics 212, 2019: Lecture 17
  78. Physics 212, 2019: Lecture 18
  79. Physics 212, 2019: Lecture 19
  80. Physics 212, 2019: Lecture 2
  81. Physics 212, 2019: Lecture 20
  82. Physics 212, 2019: Lecture 22
  83. Physics 212, 2019: Lecture 3
  84. Physics 212, 2019: Lecture 4
  85. Physics 212, 2019: Lecture 5
  86. Physics 212, 2019: Lecture 6
  87. Physics 212, 2019: Lecture 7
  88. Physics 212, 2019: Lecture 8
  89. Physics 212, 2019: Lecture 9
  90. Physics 212, 2019: Syllabus
  91. Physics 212, 2020: Computational Modeling For Scientists And Engineers
  92. Physics 212, 2020: Syllabus
  93. Physics 380, 2010: Basic Probability Theory
  94. Physics 380, 2010: Coding Theorems
  95. Physics 380, 2010: Fourier Analysis
  96. Physics 380, 2010: Information, Gambling, and Population Biology
  97. Physics 380, 2010: Information Processing in Biology
  98. Physics 380, 2010: Information Theory
  99. Physics 380, 2010: Introduction
  100. Physics 380, 2010: Linear Response Theory
  101. Physics 380, 2010: Random Walks
  102. Physics 380, 2011: Block four: Adaptation
  103. Physics 380, 2011: Block one: Biological information processing is probabilistic
  104. Physics 380, 2011: Block three: Dynamical Information Processing
  105. Physics 380, 2011: Block two: Information theory in biological signaling
  106. Physics 380, 2011: Homework 1
  107. Physics 380, 2011: Homework 10
  108. Physics 380, 2011: Homework 2
  109. Physics 380, 2011: Homework 3
  110. Physics 380, 2011: Homework 4
  111. Physics 380, 2011: Homework 5
  112. Physics 380, 2011: Homework 6
  113. Physics 380, 2011: Homework 7
  114. Physics 380, 2011: Homework 8
  115. Physics 380, 2011: Homework 9
  116. Physics 380, 2011: Information Processing in Biology
  117. Physics 380, 2011: Lecture 1
  118. Physics 380, 2011: Lecture 10
  119. Physics 380, 2011: Lecture 11
  120. Physics 380, 2011: Lecture 12
  121. Physics 380, 2011: Lecture 13
  122. Physics 380, 2011: Lecture 14
  123. Physics 380, 2011: Lecture 15
  124. Physics 380, 2011: Lecture 16
  125. Physics 380, 2011: Lecture 17
  126. Physics 380, 2011: Lecture 18
  127. Physics 380, 2011: Lecture 19
  128. Physics 380, 2011: Lecture 2
  129. Physics 380, 2011: Lecture 21
  130. Physics 380, 2011: Lecture 22
  131. Physics 380, 2011: Lecture 23
  132. Physics 380, 2011: Lecture 24
  133. Physics 380, 2011: Lecture 25
  134. Physics 380, 2011: Lecture 26
  135. Physics 380, 2011: Lecture 27
  136. Physics 380, 2011: Lecture 3
  137. Physics 380, 2011: Lecture 4
  138. Physics 380, 2011: Lecture 5
  139. Physics 380, 2011: Lecture 6
  140. Physics 380, 2011: Lecture 7
  141. Physics 380, 2011: Lecture 8
  142. Physics 380, 2011: Lecture 9
  143. Physics 380, 2012: Homework 11
  144. Physics 380, 2012: Homework 12
  145. Physics 434, 2012: Block one: Biological information processing is probabilistic
  146. Physics 434, 2012: Block three: Dynamical Information Processing
  147. Physics 434, 2012: Block two: Information theory in biological signaling
  148. Physics 434, 2012: Homework 1
  149. Physics 434, 2012: Homework 10
  150. Physics 434, 2012: Homework 2
  151. Physics 434, 2012: Homework 3
  152. Physics 434, 2012: Homework 4
  153. Physics 434, 2012: Homework 5
  154. Physics 434, 2012: Homework 6
  155. Physics 434, 2012: Homework 7
  156. Physics 434, 2012: Homework 8
  157. Physics 434, 2012: Homework 9
  158. Physics 434, 2012: Information Processing in Biology
  159. Physics 434, 2012: Lecture 1
  160. Physics 434, 2012: Lecture 10
  161. Physics 434, 2012: Lecture 14
  162. Physics 434, 2012: Lecture 15
  163. Physics 434, 2012: Lecture 16
  164. Physics 434, 2012: Lecture 17
  165. Physics 434, 2012: Lecture 20
  166. Physics 434, 2012: Lecture 4
  167. Physics 434, 2012: Lecture 5
  168. Physics 434, 2012: Lecture 6
  169. Physics 434, 2012: Lecture 7
  170. Physics 434, 2012: Lectures 10-11
  171. Physics 434, 2012: Lectures 12-13
  172. Physics 434, 2012: Lectures 2-3
  173. Physics 434, 2012: Lectures 8, 9
  174. Physics 434, 2012: Syllabus
  175. Physics 434, 2014: Block one: Biological information processing is probabilistic
  176. Physics 434, 2014: Central limit theorem
  177. Physics 434, 2014: Continuous randomness
  178. Physics 434, 2014: Homework 1
  179. Physics 434, 2014: Homework 2
  180. Physics 434, 2014: Homework 3
  181. Physics 434, 2014: Homework 4
  182. Physics 434, 2014: Homework 5
  183. Physics 434, 2014: Homework 6
  184. Physics 434, 2014: Homework 7
  185. Physics 434, 2014: Homework 8
  186. Physics 434, 2014: Information Processing in Biology
  187. Physics 434, 2014: Introduction
  188. Physics 434, 2014: Luria-Delbruck experiment
  189. Physics 434, 2014: Project 1 -- Multistability and a molecular clock
  190. Physics 434, 2014: Project 2 -- Who controls whom?
  191. Physics 434, 2014: Project 3 -- Noise propagation
  192. Physics 434, 2014: Project 4 -- Luria and Delbruck, take 2
  193. Physics 434, 2014: Projects
  194. Physics 434, 2014: Random walks and diffusion
  195. Physics 434, 2014: Scripts
  196. Physics 434, 2014: Search and first passage times
  197. Physics 434, 2014: Stochastic chemical kinetics
  198. Physics 434, 2014: Syllabus
  199. Physics 434, 2015: Homework 1
  200. Physics 434, 2015: Homework 10
  201. Physics 434, 2015: Homework 2
  202. Physics 434, 2015: Homework 3
  203. Physics 434, 2015: Homework 4
  204. Physics 434, 2015: Homework 5
  205. Physics 434, 2015: Homework 6
  206. Physics 434, 2015: Homework 7
  207. Physics 434, 2015: Homework 8
  208. Physics 434, 2015: Homework 9
  209. Physics 434, 2015: Introduction to Information theory
  210. Physics 434, 2015: Physical Biology
  211. Physics 434, 2015: Project 1, Luria-Delbruck, Revisited
  212. Physics 434, 2015: Project 2 -- Multistability in gene expression
  213. Physics 434, 2015: Project 3 -- Who controls whom?
  214. Physics 434, 2015: Project 4 -- Noise Propagation
  215. Physics 434, 2015: Project 5
  216. Physics 434, 2015: Syllabus
  217. Physics 434, 2016: Discrete randomness
  218. Physics 434, 2016: Homework 1
  219. Physics 434, 2016: Homework 2
  220. Physics 434, 2016: Homework 3
  221. Physics 434, 2016: Homework 4
  222. Physics 434, 2016: Homework 5
  223. Physics 434, 2016: Homework 6
  224. Physics 434, 2016: Homework 7
  225. Physics 434, 2016: Homework 8
  226. Physics 434, 2016: Homework 9
  227. Physics 434, 2016: Law of large numbers
  228. Physics 434, 2016: Physical Biology
  229. Physics 434, 2016: Project 1
  230. Physics 434, 2016: Project 2
  231. Physics 434, 2016: Syllabus
  232. Physics 434, Lecture 1 additional notes
  233. Physics 511A, 2011: Chapter 1, Volume 2. The principle of relativity
  234. Physics 511A, 2012: Chapter 1, Volume 8. Electrostatics of conductors
  235. Physics 511A, 2012: Chapter 2, Volume 2. Relativistic mechanics
  236. Physics 511A, 2012: Chapter 2, Volume 8. Electrostatics of dielectric
  237. Physics 511A, 2012: Chapter 3, Volume 2. Charges in electromagnetic field
  238. Physics 511A, 2012: Chapter 3, Volume 8. Steady current
  239. Physics 511A, 2012: Chapter 4, Volume 2. Electromagnetic field equations
  240. Physics 511A, 2012: Chapter 4, Volume 8. Static magnetic field
  241. Physics 511A, 2012: Chapter 5, Volume 2. Constant electromagnetic fields
  242. Physics 511A, 2012: Chapter 6, Volume 2. Electromagnetic waves
  243. Physics 511A, 2012: Chapter 7, Volume 2. Propagation of light
  244. Physics 511A, 2012: Chapter 8, Volume 2. The field of moving charges
  245. Physics 511A, 2012: Chapter 9, Volume 2. Radiation of electromagnetic waves
  246. Physics 511A, 2012: Graduate Electrodynamics
  247. Physics 511A, 2012: Waves in media
  248. Physics 511A, 2013: Chapter 1, Volume 2. The principle of relativity
  249. Physics 511A, 2013: Chapter 1, Volume 8. Electrostatics of conductors
  250. Physics 511A, 2013: Chapter 2, Volume 2. Relativistic mechanics
  251. Physics 511A, 2013: Chapter 2, Volume 8. Electrostatics of dielectric
  252. Physics 511A, 2013: Chapter 3, Volume 2. Charges in electromagnetic field
  253. Physics 511A, 2013: Chapter 3, Volume 8. Steady current
  254. Physics 511A, 2013: Chapter 4, Volume 2. Electromagnetic field equations
  255. Physics 511A, 2013: Chapter 4, Volume 8. Static magnetic field
  256. Physics 511A, 2013: Chapter 5, Volume 2. Constant electromagnetic fields
  257. Physics 511A, 2013: Chapter 6, Volume 2. Electromagnetic waves
  258. Physics 511A, 2013: Chapter 7, Volume 2. Propagation of light
  259. Physics 511A, 2013: Chapter 8, Volume 2. The field of moving charges
  260. Physics 511A, 2013: Chapter 9, Volume 2. Radiation of electromagnetic waves
  261. Physics 511A, 2013: Graduate Electrodynamics
  262. Physics 511A, 2013: Waves in media
  263. Physics 511A, 2014: Chapter 1, Volume 2. The principle of relativity
  264. Physics 511A, 2014: Chapter 1, Volume 8. Electrostatics of conductors
  265. Physics 511A, 2014: Chapter 2, Volume 2. Relativistic mechanics
  266. Physics 511A, 2014: Chapter 2, Volume 8. Electrostatics of dielectric
  267. Physics 511A, 2014: Chapter 3, Volume 2. Charges in electromagnetic field
  268. Physics 511A, 2014: Chapter 3, Volume 8. Steady current
  269. Physics 511A, 2014: Chapter 4, Volume 2. Electromagnetic field equations
  270. Physics 511A, 2014: Chapter 4, Volume 8. Static magnetic field
  271. Physics 511A, 2014: Chapter 5, Volume 2. Constant electromagnetic fields
  272. Physics 511A, 2014: Chapter 5, Volume 8. Ferromagnetism and antiferromagnetism
  273. Physics 511A, 2014: Chapter 6, Volume 2. Electromagnetic waves
  274. Physics 511A, 2014: Chapter 7, Volume 2. Propagation of light
  275. Physics 511A, 2014: Chapter 8, Volume 2. The field of moving charges
  276. Physics 511A, 2014: Chapter 9, Volume 2. Radiation of electromagnetic waves
  277. Physics 511A, 2014: Graduate Electrodynamics
  278. Physics 511A, 2014: Superconductivity
  279. Physics 511A, 2014: Waves in media
  280. Postdoctoral position in theoretical biophysics
  281. Presentations
  282. Professional
  283. Projects
  284. Publications
  285. Publications about our research
  286. RBC Metabolic Network
  287. Relational networks
  288. Research Interests
  289. Reverse-engineering algorithms benchmarks
  290. Reverse engineering cellular networks
  291. Rise of the 140 character paper
  292. Schwab et al., 2014
  293. Silbergleit et al., 2003a
  294. Silbergleit et al., 2003b
  295. Simpler methods for High Throughput Data analysis
  296. Singh et al., 2014
  297. Sinitsyn and Nemenman, 2007
  298. Sinitsyn and Nemenman, 2007a
  299. Sinitsyn and Nemenman, 2010
  300. Sinitsyn et al., 2009
  301. Smart Thoughts From Smart People
  302. Smith et al., 2016
  303. Srivastava et al., 2017
  304. Stochastic dynamics on biological networks
  305. Stochastic path integral
  306. Stochasticity in regulatory networks
  307. Stromberg et al., 2013
  308. Studies in sensorimotor adaptation to advance motor rehabilitation
  309. Tanase-Nicola and Nemenman, 2011
  310. Tang et al., 2014
  311. Tchernookov and Nemenman, 2013
  312. Teaching
  313. Teuscher et al, 2008
  314. The Berry phase in stochastic kinetics
  315. Tools and approximations for stochastic analysis
  316. Visual neural computation
  317. Wang et al., 2005
  318. Wang et al., 2006
  319. Wang et al., 2007
  320. Wang et al., 2009
  321. Wei et al., 2011
  322. Wiggins and Nemenman, 2003
  323. Ziv et al., 2007

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